How Does It Work?
In Y2H screening, the bait protein is fused to a DNA-binding domain, while the prey protein is fused to an activation domain. If the bait and prey proteins interact within the yeast cell, the activation domain is brought into proximity with the DNA-binding domain, which drives the transcription of a reporter gene. This gene typically encodes for a protein that can be easily detected, such as
beta-galactosidase or an antibiotic resistance marker.
Advantages and Limitations
The primary advantage of Y2H screening is its ability to identify interactions in a living cell, providing a more physiologically relevant context compared to in vitro methods. Additionally, it can be scaled to screen large libraries of potential prey proteins, making it a powerful tool for
high-throughput screening.
However, Y2H screening has limitations. It can produce
false positives and false negatives due to non-specific interactions or the inability of certain proteins to functionally express in yeast. Furthermore, interactions detected in yeast may not always reflect those in human cells, necessitating follow-up validation in mammalian systems.