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tcgabiolinks
What Analysis Can Be Performed with TCGAbiolinks?
TCGAbiolinks supports a wide range of analyses, including:
Differential Expression Analysis
Survival Analysis
Pathway Enrichment Analysis
Visualization
(e.g., heatmaps, volcano plots)
For instance, to perform differential expression analysis between tumor and normal samples, you can use the DESeq2 package in conjunction with TCGAbiolinks:
library(DESeq2)
dds
Frequently asked queries:
What is TCGAbiolinks?
Why is TCGAbiolinks Important for Cancer Research?
How to Install TCGAbiolinks?
What Types of Data Can Be Accessed with TCGAbiolinks?
How to Retrieve Data Using TCGAbiolinks?
What Analysis Can Be Performed with TCGAbiolinks?
What Are the Limitations of TCGAbiolinks?
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